Bioconductor Copy number

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864

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cn.MOPS CNV copy number

4.7 years ago liorglic ▴ 10

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1.7k

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copy number

7.3 years ago mms140130 • 0

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861

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cghcall r cgh copy number

7.5 years ago kitcurtius • 0

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1.4k

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bioconductor ChAMP copy number batch effect normalization

updated 7.7 years ago by rasmus.rydbirk ▴ 10 • written 7.7 years ago by apmishra • 0

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1.1k

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ChAMP champ copy number

7.8 years ago apmishra • 0

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2.8k

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CopywriteR copy number

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.8 years ago by smcnulty • 0

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1.1k

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crlmm copy number

9.6 years ago kforner • 0

7 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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