Bioconductor Copy number

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cn.MOPS CNV copy number

4.9 years ago liorglic ▴ 10

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copy number

7.5 years ago mms140130 • 0

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896

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cghcall r cgh copy number

7.7 years ago kitcurtius • 0

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bioconductor ChAMP copy number batch effect normalization

updated 7.9 years ago by rasmus.rydbirk ▴ 10 • written 7.9 years ago by apmishra • 0

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ChAMP champ copy number

8.0 years ago apmishra • 0

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CopywriteR copy number

updated 8.9 years ago by t.kuilman ▴ 170 • written 9.0 years ago by smcnulty • 0

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crlmm copy number

9.8 years ago kforner • 0

7 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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